Install

GMGC-mapper runs on Python 3.6-3.8 and requires prodigal to be available for genome mode.

Conda install

The easiest way to install GMGC-mapper is through bioconda, which will ensure all dependencies (including prodigal) are installed automatically:

conda install -c bioconda gmgc-mapper

pip install

Alternatively, GMGC-mapper is available from PyPI, so can be installed through pip:

pip install GMGC-mapper

Note that this does not install prodigal (which is necessary for the genome-based workflow).

Install from source

Finally, especially if you are retrieving the cutting edge version from Github, you can install with the standard

python setup.py install