Install
GMGC-mapper runs on Python 3.6-3.8 and requires prodigal to be available for genome mode.
Conda install
The easiest way to install GMGC-mapper is through bioconda, which will ensure
all dependencies (including prodigal
) are installed automatically:
conda install -c bioconda gmgc-mapper
pip install
Alternatively, GMGC-mapper
is available from PyPI, so can be installed
through pip:
pip install GMGC-mapper
Note that this does not install prodigal
(which is necessary for the
genome-based workflow).
Install from source
Finally, especially if you are retrieving the cutting edge version from Github, you can install with the standard
python setup.py install