GMGC-mapper is a command line tool to query input genome to the Global Microbial Gene Catalog (GMGC). It will return the summary of alignment categories and genome bins.


  • -i/--input : path to the input genome file(.fasta/.gz/.bz2).

  • -o/--output : Output directory (will be created if non-existent).

  • -nt_input : path to the input DNA gene file(.fasta/.gz/.bz2).

  • -aa_input : path to the input Protein gene file(.fasta/.gz/.bz2).

The input must contain a genome file or DNA and Protein gene file or just Protein gene file.